| cutgextract

## Function

Extract data from CUTG

## Description

**************** EDIT HERE ****************

## Usage

Here is a sample session with cutgextract:

    % cutgextract

**************** EDIT HERE ****************

## Command line arguments

       Mandatory qualifiers:
      [-directory]         dirlist    CUTG directory

       Optional qualifiers: (none)
       Advanced qualifiers:
       -wildspec           string     Type of codon file

       Associated qualifiers: (none)
       General qualifiers:
       -auto                boolean    Turn off prompts
       -stdout              boolean    Write standard output
       -filter              boolean    Read standard input, write standard output
       -options             boolean    Prompt for required and optional values
       -debug               boolean    Write debug output to program.dbg
       -acdlog              boolean    Write ACD processing log to program.acdlog
       -acdpretty           boolean    Rewrite ACD file as program.acdpretty
       -acdtable            boolean    Write HTML table of options
       -verbose             boolean    Report some/full command line options
       -help                boolean    Report command line options. More
                                      information on associated and general
                                      qualifiers can be found with -help -verbose
       -warning             boolean    Report warnings
       -error               boolean    Report errors
       -fatal               boolean    Report fatal errors
       -die                 boolean    Report deaths

Error: File /packages/emboss_dev/gwilliam/emboss/emboss/emboss/acd/cutgextract.acd line 7: (directory) Unknown attribute 'name'

## Input file format

**************** EDIT HERE ****************

## Output file format

**************** EDIT HERE ****************

## Data files

**************** EDIT HERE ****************

## Notes

None.

## References

None.

## Warnings

None.

## Diagnostic Error Messages

None.

## Exit status

It always exits with status 0.

## Known bugs

None.

## See also

Program name | Description
--- | ---
aaindexextract | Extract data from AAINDEX
printsextract | Extract data from PRINTS
prosextract | Builds the PROSITE motif database for patmatmotifs to search
rebaseextract | Extract data from REBASE
tfextract | Extract data from TRANSFAC

## Author(s)

Alan Bleasby (ableasby © hgmp.mrc.ac.uk)
HGMP-RC, Genome Campus, Hinxton, Cambridge CB10 1SB, UK

## History

Written (date) - author.

## Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

## Comments